In Marvel Zombies 2, he notices that his hunger is starting to fade and, as a result, is the first of the Galacti to turn against his fellow zombies. Eventually with the aid of Forge, Malcom, and the Acolytes, the zombies retaining their hunger are defeated. Spider-Man is one of the zombies that remain and continue work to rebuild New Wakanda, and bury the dead.[volume & issue needed]
When Classi reaches the back door of Buca de Faggoncini to hide, a mobster kills Captain Diabetes, who is only revived by a sudden "glitch" in time initiated by the New Kid. Calling in backup, they are joined by their allies in fighting the chefs of the restaurant, soon discovering a room full of cats in cat carriers and another group of mobsters, who are only taken out by Red Wine Drunk Randy Marsh, desperately looking for his keys. As Randy is defeated, Coon and Friends manages to capture Classi.
All seemed to go well again until Mary-Jane, whom had started acting again, was threatened by a stalker. It started with phone-calls, but when Mary-Jane took a plane, it exploded in mid-air and seemingly killed Mary-Jane. Peter, firstly stricken with grief, did not believe she had died. He knew it must have had something to do with the stalker, and Peter started a crusade to find out the truth. This brought him to Latveria and in a fight against the Hulk among others. Eventually, Peter learned that it was indeed the stalker that had faked Mary-Jane's death and had held her captive during it all. The stalker was a mutant that absorbed all of Peter's memories when he was saved by him during one of Spider-man's fights on the streets of New York. The Stalker needed Mary-Jan for himself because of it and he felled he knew her. Spider-man managed to save Mary-Jane and defeat the Stalker. Mary-Jane however was traumatized by the experience and needed time of from her life as the wife of a superhero. The two parted ways for some time.